NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209166_10000005

Scaffold Ga0209166_10000005


Overview

Basic Information
Taxon OID3300027857 Open in IMG/M
Scaffold IDGa0209166_10000005 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)428464
Total Scaffold Genes364 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)273 (75.00%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000426Metagenome / Metatranscriptome1154Y
F000534Metagenome / Metatranscriptome1044Y
F001318Metagenome / Metatranscriptome724Y
F001511Metagenome / Metatranscriptome680Y
F002898Metagenome / Metatranscriptome522Y
F004902Metagenome / Metatranscriptome419Y
F005617Metagenome / Metatranscriptome395Y
F040900Metagenome / Metatranscriptome161Y
F060288Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0209166_1000000511F002898GAGGMADGEKQSRFRLLIEFFKRLLGRKAAPPGDPYAYAMAPIRRGPKGRSGAAVAEIEDDSFRSFPPRHGR
Ga0209166_10000005171F004902AGGMKKPTIRVTKWLGDIPVEAGCSACPGVVFRAKGSSHRPNREEFQKSLQAQFDEHCKAVHL
Ga0209166_10000005192F000534AGGAMPQEISVSYQAIKSKVYRLIDALVVGEKSEAEVAESVRRWWSLIHPADRPIAQKYLLMILGRSNSALDAMGAELLSVSGCEIALPLADPSLPSKRMRLVQRLVKESSVRTAV
Ga0209166_10000005193F001318GGAGGMKVLAWMLAVPVLISLAGAQISPSLNRQSPSQEPSSQRSWHAADPGDRMFFPRDMFWGWAQFDLSPPHNEIDPNLCAGNAGQYGGANAPCSMFARYMLSGILEVRPFGRGPLRRFMVYGAPTFLFGKNVPQYLYTWSPDAIGIEHSWGAGIYLNKGFEFRVTQHFLFDRLGARNRSLGVADLGNNGPWGRYMSLGVRKTFGTRRW
Ga0209166_10000005197F040900N/AMPAATILVMFYAGPAADDALKLLLLALIGGGLLVLGRWSSRLGGARSHDAFPDVPTPDVADLLPGSTPKLWPPSAEEVAASLPFDPALGKIRIKKFFFEKTDAIPGPTDRDVFADELHVELYDPDSDHSWWQSYFVATPQGLAKILHDKSWRYLHAPDVLVFSRYDLEEIRRAVVSRIMADHEYFKDKEQEEEEPL
Ga0209166_10000005221F000426AGGGGGMKDIHEVLRQKQAKYAQLGKQIEMLQQAAEKLREVAPLLAESDEEDNVVLAEVDDAIGQTDSMAAKAGAGSGSAAAPKGSRPTAPRWP
Ga0209166_10000005250F005617AGAAGMKVQIAAQAVTEPLTCEGETIVVNLHGALISTAVPLRVGMKIEVHVLLTGKRARAEVAYIDPDRPRLCGIGLEKPSNIWGVSLPPEDWIEMDPR
Ga0209166_10000005347F060288N/ALDNRDRKVTPTNVVARGGTRIPCEIPVLLTNSDPQQRFTETCKIILANLRGCALRAPRPITTGTEVQLHGLPGKPQVAARVVNCISLGEFEKMWLLGLALNEAGNVWGIANVPDDWSQS
Ga0209166_100000058F001511GGAGMFEDVDGMEVFVNPDRVIWIREYPNQTTVISCGHEDKFAVRLAPAHAVAALGKAIR
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