Scaffold Ga0209166_10000004

Overview

Basic Information

• Taxon OID: 3300027857
• Scaffold ID: Ga0209166_10000004
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 606044
• Total Scaffold Genes: 571
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 450 (78.81%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000579	Metagenome / Metatranscriptome	1011	Y
F007480	Metagenome / Metatranscriptome	350	Y
F008454	Metagenome / Metatranscriptome	333	Y
F010670	Metagenome / Metatranscriptome	300	Y
F014995	Metagenome / Metatranscriptome	258	Y
F022700	Metagenome / Metatranscriptome	213	Y
F030498	Metagenome / Metatranscriptome	185	Y
F062774	Metagenome / Metatranscriptome	130	Y
F075734	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209166_10000004123	F062774	N/A	MKAGEKYFALTPKGVEELRGRAAKLDANTRNILSLIEQGFTSADALLQRSKSTRDEMIDMLRLLLGNGFVSTAVSDGTVKAPTPEPTPSVADSISERLRLKQGISPSQARFALSNFCLDQFGTAGKDLADVVDLCEDVAGLQMALDSIRSEVKRVCPDQRPALVACVREINETDYDG
Ga0209166_10000004127	F022700	N/A	MGHWYYGRHFTLLAAGAVILFFVAQWNLLRDSLIGTFALNGALHALALVSTLRAPEVLSRKAAFIAIAIVLSVMSLYVGIIGLTLFAVLPGSERLYVVLGVCALSGAITYGSLVRLFWLRRLSSRLILSMAASCVLATLLAFLARTHAVWLGSWWLAAVWWFAFSGSLYFFDTHPDVLQRSKYNAANKGAPTWRDA
Ga0209166_10000004248	F075734	GAGG	MKKYRLGLAALALMVTAAHADDYLSPTEERVRLSLGVVRYSNRTDLQINSSADVPGTPLNAEDEFGLDKVDYEAKVQALVRVGERNRLRFDYFSLDRSGQNTLTQPIVFRDVVLQPGDPLKSDLSIRTFGITYGYSFLHSDRYEVAATIGINDTDISARARVQTQTRHIDQTEDQAGPFPTVGLDATYVLSKRFYFDGRAQYFKVHIDDIDGSLGIYELDALYRLRPNISFALGYTSLRAHLASTQIKQSGLFNFNSSGPEIFLRVAF
Ga0209166_10000004274	F030498	AGGAG	MATMFGKCRSGSDFWSMRREASLNWLALGLLLAAWNASDNDAAANDAAADAHRRPAALRGYTHVSVRAANRVAADL
Ga0209166_10000004292	F008454	GGAGG	MSKTYVAGLMSGFLGGMMGAFVLGHLGVPVISPASAAPVQEMISAGRIRLVDATGRTRAEFAMSPDGGPGLFFYDSKGRNRLVLGLYSPAESEYPFVVLNDTHNEAAGIFRLFGGQETPVVVLKNKGADRSILGLNPSSTEPFLVNYSSDRKKTAIFGSF
Ga0209166_10000004358	F014995	GGAGG	VHHRRPLLYPWLSSTALTALFMAGTSMSWGAPRVDDLVPQAPAAFLPGGMLGIQLGGSWEASKQNPSLHRLTCQSVPDARDFDEVCFFRASADSRVGGAAIHDGFIVRKDDHVVLVGTGIAIKNADDPLAESVVQSFQSQIHSAFQHTGDNVLFVKLPARRLTDDEMAGYSQKAPVLLVQLEPKNNELAILYGYLGPVNVFGSLTSD
Ga0209166_10000004419	F010670	GGAGG	MNKFVLIVLATFTLMASGLSVAGDKTTDAPAKSSSFVPHPHTSRHVYGTPIQPAVVSHARTSPHKQTSKKRSSKTASRDKR
Ga0209166_10000004466	F007480	GGAGG	MDNPNSPANPSPRTTLKLKAGVKRALEEPKAKPEPQPQSKGNQKPGAHWSDEYKRRMQADMDALTSR
Ga0209166_1000000499	F000579	N/A	MVLQWHALGGTWTACDMPPALVHGIALIRAAGPNICIFGQGGRLRLQVGPHQYALSENSPRISCTRGIASFGFRRRFTVKSSSGDVLFSHSYWTHQGRDFYRWLAEKASDPDWRISCARQWSDGVASGAMRPH