Scaffold Ga0209166_10000003

Overview

Basic Information

• Taxon OID: 3300027857
• Scaffold ID: Ga0209166_10000003
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 613129
• Total Scaffold Genes: 572
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 437 (76.40%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001426	Metagenome / Metatranscriptome	697	Y
F002530	Metagenome / Metatranscriptome	551	Y
F003382	Metagenome / Metatranscriptome	490	Y
F024147	Metagenome / Metatranscriptome	207	Y
F025792	Metagenome / Metatranscriptome	200	Y
F041878	Metagenome / Metatranscriptome	159	N
F061595	Metagenome / Metatranscriptome	131	Y
F096632	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209166_10000003155	F041878	AGGAGG	MEYAQLIQAAASIAGGMAAAHYDKFSGLVATRITDIAETAVKIARAIDAEAQKQP
Ga0209166_10000003178	F002530	N/A	MSRDDEDRILHGLYYYRENIDEDVQVSGEQLLWLAMHPLREGEAWHRDGKLQSLDTSAFPEEVRGKLITAKLELPLRYLQYRRLITYARRSDGMFYAAVTFAGADRAIRLHTRRGRMDLWYREHRDGVLGMSITVLISLITALLTVIVTTKLLKP
Ga0209166_10000003186	F025792	N/A	MIHPVWRLIAPALTLTAGLLRPDMGAAQTPEQEKLWEAQRAQSQAEQKAKAELLASQRAARRADPMAWVRTLNPLGEGGWQFRAVAADGSWAAFSTEHQMKRSGRLITAWLRQEYPEPQRNSAGDIYFSYVEKIQFDCANERARALLIIYYSDNNITGSESSEATDVKQAVWVPIVPGTPSENIYQWACEVANGKAHS
Ga0209166_10000003387	F096632	N/A	MTLSAFLKEPLEGKTSLSRVVWLYGVVGSLLIGAVELFLDPENQFVMRVYTILGFFFGMYVTLATYRCAKNSKSPLLARVVRISAVLTLLLLPVLTYLELTGALSLTGLMQDPLLE
Ga0209166_10000003403	F061595	GAGG	MSTSHRQTSCPTIAYSAVMQRVTHPDPDLELEFIREFSVRGEQLMAAATDDRRERIRIAIYVQNLVHQPFRDTGMDYAAAYHKCYGRPIEMRRTVRPQLKPRADTASEH
Ga0209166_1000000355	F024147	AGGCGG	MASDFKKPADDASFTFAVNELRWAEAAQTLSLDPGPKKPSYREQGSDPYNSSGSFDRTKHWTRVGKR
Ga0209166_1000000357	F003382	GGAG	VRDSTPAGRGAGIRLQLCMAFDLRSFAKSSPWAAELAAAAAGLLLGVALMPVLIFYAGLATLGRYEGASLGRLYSSLFEGLHDASIASWVVLLGPYGLYLLLRALRGWWRASAKLY
Ga0209166_1000000358	F001426	N/A	MSWTPQRLYELKPWAFMGAGALLGIGMMLWSLWAGLWTVWRGLLCLGGVGLTVVGGATLQMRQDYRAKSKWRRDAPP