NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209693_10093122

Scaffold Ga0209693_10093122


Overview

Basic Information
Taxon OID3300027855 Open in IMG/M
Scaffold IDGa0209693_10093122 Open in IMG/M
Source Dataset NameWarmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1490
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024187Metagenome / Metatranscriptome207Y
F059206Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0209693_100931223F059206GAGMIEGRARLREIGILYRSALYPLSDDGIAIDHMLGAANYRPLREHEYLITPLVRTKWL
Ga0209693_100931224F024187GAGMFPETDELSKIISDIIKIVFKRRLVDRVLRLWIEMARGQGFPRRDQIEPSKLGLDWRNCLVIGVQSPVQLSYLVAVGENLSFTHCPADSLEGVLLSHVPQVLSENAVA

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