Scaffold Ga0209693_10000187

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209693_10000187

Scaffold Ga0209693_10000187

Overview

Basic Information
Taxon OID	3300027855 Open in IMG/M
Scaffold ID	Ga0209693_10000187 Open in IMG/M
Source Dataset Name	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	23900
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (78.26%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location Name	USA: New Hampshire, Hubbard Brook experimental Forest
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001450	Metagenome / Metatranscriptome	692	Y
F004287	Metagenome / Metatranscriptome	445	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209693_1000018722	F001450	GGA	LTARVQKSLSPLIRVTRETHEAPPAIQERVERAGGTNSYGEANFRVVWGGARLTWIGGRWTDRDANGNVLRQTIETRRVPKYLPLNRWHIERWAPRESYGSPEEWYAQTTEVEDGIRIAALGPYPSRGEYEHCFTLESASGEFISLTPAACDWIVHAIEWSRRQPRRRLRGAIAAREARRALRWDRDADDLLDDAVPAFHSAPFVPVAGEYIRREAESDSVLNDSVL
Ga0209693_1000018723	F004287	N/A	MGRTVPWRASLWTQHQSKENQLNITTTAGSGLRGKLVVDTRATGDTAATVTIASISQQDWYISRTHGVYHIPACAKGEAYSLLLITSRGDAIDLGDNRKFPFTISARDIAEDLLQDLQDHGVFVCAGARPTAEELSVVTARRDEFYQRLVTDGDTMWARGHSFREISDLHRRAAISLGAEREWAYVPVRMADCPACGEKVKPGVAVCRHCNAILDKEKAAKHGLGLGA

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.