NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209517_10082653

Scaffold Ga0209517_10082653


Overview

Basic Information
Taxon OID3300027854 Open in IMG/M
Scaffold IDGa0209517_10082653 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2226
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076450Metagenome118N
F079694Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0209517_100826531F076450N/AMRSDSQGRATQIGRYLNTPLVLNVSVTSASVQLNQNRHYRLWGSVDLFFQFGPTGVTATLNSHPAAAKLDYLHYTDDTNTTLAAIVSSGSGVLFISEIDAQGV
Ga0209517_100826532F079694AGGAGMPTYQNATPPSALYPGDVGYSWNNEAFPGTTTSGAQFALSTPGGYAPETGFAVRWQTIFGTAPSAVNIRLQGAMADVDAEYMDIDTSTNVAGEGRQVTGIQAKFLRIKLYSSTGGSGLTAKILV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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