Scaffold Ga0209517_10062435

Overview

Basic Information

• Taxon OID: 3300027854
• Scaffold ID: Ga0209517_10062435
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2707
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014894	Metagenome / Metatranscriptome	259	Y
F032938	Metagenome / Metatranscriptome	178	Y
F036810	Metagenome	169	Y
F045709	Metagenome / Metatranscriptome	152	Y
F070426	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209517_100624352	F036810	AGGAG	MSLQLSQGTCVSTPAVWLARATAKCRAIQLSIERRSFERKLETIVRAANAHHSCGQSPGASQFKLLRKSADDLCASFAQRWDISPELLEAQIPALAKLRSLANPPTKPEPLVLVSLGVVGAVALFFLMGVLAGLASVGYHLIGGR
Ga0209517_100624353	F070426	GGAGG	MILELILAAEASAFSASWIRRSRMRRQEIMLGGSPSEINLPFLDQYLRQQTANPTRLQTFAAQRLTAVCRRAVHTGAFELLVLKLIQSASRRYRRESEISKVEVIL
Ga0209517_100624354	F045709	GAGG	VNLTPSQKGSFLAGVGLWVLIWASVWKADDLAEAMRIQRWFNANRCLRWIGQHKSTSLLGTELINYGTHGLDPLGVSFSLGGTLVNVLFIYLFLPCLERLLHQNGTASTTLQ
Ga0209517_100624355	F014894	AGGAGG	MSLRKGSATMRMSIGVPGFSIYFEHHQVKPFIKDHSKKAKDLLNERVVPAVLRGTCKALEVVANNTADAHDYLISKMKSKQAA
Ga0209517_100624356	F032938	AGGAG	VQKYLVVSYDDDQQQWFWDYVAAKTAEDAVARVCERRPYVIAADAASLSQVQGIARDMKSRSIARIIHQFNSDTAPAKE