Scaffold Ga0209517_10053875

Overview

Basic Information

• Taxon OID: 3300027854
• Scaffold ID: Ga0209517_10053875
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3004
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001432	Metagenome / Metatranscriptome	696	Y
F044616	Metagenome	154	Y
F087101	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209517_100538754	F044616	AGGA	MRSELPTEIECPLCLGVGKLSRTEMLERLGMRDAARVAQLSAEEAFRLLQQRHTHEHQTAWTRFEVELAKRTTEIGEHFKDELRGAQSQKEDLTRRIEDCLREVAELRERNQALQSELSKVARIGKREEVEFADEARTWAGIAISEKLPRNGDFIISYRAPNGDPIEPKILIDNKDKSVIAESDIDKLVRDARERSIAVAALVAREESQLRQVDRDSRWSRKDGVWLLRTTRQWIARDLDVLKPIFERMRVHGFDLLERNAVLAEELRRTFPEIDRIEKELGKAAKAIQSVSALVVRYRERLRDLSDTPASMKIAAKPERDGGKCETVGA
Ga0209517_100538755	F087101	GGAGG	MADMEKVSASGDMPLRVTGEAVKYLSSLPQFHGIPDASLISLAKRRTRLYVRDRWVAIALIIGNRMPIPVPTPDGRPQGKASEATTPAKLVLINGGRIPR
Ga0209517_100538756	F001432	AGGAG	MSLKKVFIRDGKRSIIGSVTSGYSDTSAVVRDENNQIAGRSSERFHTTRDEHGNLVSTNSPDPGLILGRRK