Scaffold Ga0209517_10047453

Overview

Basic Information

• Taxon OID: 3300027854
• Scaffold ID: Ga0209517_10047453
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3290
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004185	Metagenome / Metatranscriptome	449	Y
F006683	Metagenome / Metatranscriptome	367	Y
F015081	Metagenome	257	Y
F015375	Metagenome / Metatranscriptome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209517_100474532	F015375	GGAG	MQIGKPLRTIVVEPLELPVEQPEREPGPKPIQSPESEPEQVPAKQ
Ga0209517_100474535	F006683	GGAGG	MNKPHRADVRQVDLKVNGITFESVRLRRGCGSDDFDILIDDPNVGRFALTAAVPSLELRDEDSDWRQVTLHELKKILAGDELTEVAEEPQASEAAERESFNRRVAEGEHIMNAEIALFRAGIPFLQLPFQQNKFVSNLFMVLNLSKAKACLQRAGFQPKVESETVLFDSRNGQPIQLIQGKYKLRESES
Ga0209517_100474536	F015081	GGA	VRLNRENITVDALIEEQRRLSASTNPFERVLGSLCIGAILKEQLVGLPNSTISQLVTDHIWSDMNLLGPESVIVEIASERLIERCETSLVCPECGSEFWRADE
Ga0209517_100474537	F004185	AGGAGG	MSLQKEFIRDGKRRIIGSVTTGYVGSFETIVRDEQNNITGSTSERFNTTRDEHDSLISINSADPGLLIHRKK