Scaffold Ga0209517_10034521

Overview

Basic Information

• Taxon OID: 3300027854
• Scaffold ID: Ga0209517_10034521
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4145
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008511	Metagenome / Metatranscriptome	332	Y
F064949	Metagenome / Metatranscriptome	128	Y
F073232	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209517_100345212	F064949	N/A	MLLFESLSAGVMAIFAGFVLVTIVVGFYVIIIWPLTFWDLANLGLEKYYSWINPILWSLFASGSLAGYWCFGGAAFKSRQKASVPSTAKSRR
Ga0209517_100345213	F073232	AGGA	MPDWTSLKWLGWISLYVIPVVFLPWAISRAWAHQHGSDLRPRPKLLFQRGELGLLGLVLASSVIWNLLQSQFMPHTIALGSVLMALGGIMAASVWVETYCRESGMKSWHPKRAWRDSRNLALLVFSMAAVMEILLDRFAKVASR
Ga0209517_100345214	F008511	AGGTGG	MSAPAVARATVHERIVVVRLADAAEAIAFLSLVFGLLLVLLPVSFPKMIVNSWERGQLMPVMMGLALLLDTCLYVRIAIMRSAKPGLVAAACLGSLPLLVVGGLSLLLQSAVSHTLALDMSNLQLRVGEEILAHTYLGLISAVFLPFLVIRLLQQFKATNS