Scaffold Ga0209517_10024491

Overview

Basic Information

• Taxon OID: 3300027854
• Scaffold ID: Ga0209517_10024491
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5369
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003851	Metagenome / Metatranscriptome	465	Y
F026325	Metagenome / Metatranscriptome	198	Y
F036259	Metagenome	170	Y
F100369	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209517_100244912	F036259	GAG	MFGAHHRGFAWKEIAKVLHMTRAVARATFWLEIKRSRSKSVKAQPPAIVIQDESDPDARKLGKPTGSR
Ga0209517_100244913	F100369	GGAG	VPLDDTIRKRDQERLRNCFLTLGSSVQSREIRVVLQYLQALDVCDLLTQSSERQAEFASATLFRFGLDTLATGFWIACVATDDWLRGQGEVHIPSSLERTIATLPPQARNMLDEVVNSGFVNDSKRTLLKDVLNPATHGDALVNVVRIGSALAQGKNWAQYLSTRMNELTHNFAVLIRELAGIDLESMAGKYMAAARQD
Ga0209517_100244918	F003851	GAGG	MKHRKLAAASSRTIDEYAKRVLRALEEATRGRANTNDPIVEQLKQCPEAFKVGEILGKAFDSLKYAQDGSEIGDRYLPPAGVVIPPLV
Ga0209517_100244919	F026325	GGAGG	MMTDPASAIKREVHQLVDLQIETLRQPSCLTTSDLLDYLGRSQKIAALYQELDQIRRASFKVQLRKAY