Scaffold Ga0209517_10020572

Overview

Basic Information

• Taxon OID: 3300027854
• Scaffold ID: Ga0209517_10020572
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6145
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015327	Metagenome / Metatranscriptome	255	Y
F015623	Metagenome / Metatranscriptome	253	Y
F028442	Metagenome / Metatranscriptome	191	Y
F037826	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209517_1002057210	F028442	AGGAGG	MTLEQALADTEKLARGGIARAQGAEQEVSCRDTQQAVRLLAEAYEHLRKRDPLYADRRRCASLAPPPASLPPS
Ga0209517_100205722	F015623	GAGG	MQQKLITVTLEPDGTSKIDLEGFADSTCGKVMNDFTGGDRVLSERRKPEYYNKDRGQQLHQGNQ
Ga0209517_100205724	F015327	GGAGG	MEPNALVECAYELMRVLKEELAEQRTVQPAFILLHDGDCELLTFSPRLFASAEGKAAVARTFRNRALQTGARGALVGLDSYCFIPDLASMREANPRLLRAAAAAGLDALIRSGFGRKSEGISVTLQTPAFHLLVQQLYTRGDNCIVFGVSQTLDSREVPMEAAGIFSIYGGQHVTRG
Ga0209517_100205726	F037826	GGAGG	MMLHPLFVADVLEGFEGTLDEVVGRVENPELNAQLDALRSQVAKLRIRIEEPLRQAEADWTVLEGDR