Scaffold Ga0209517_10004529

Overview

Basic Information

• Taxon OID: 3300027854
• Scaffold ID: Ga0209517_10004529
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18213
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006757	Metagenome / Metatranscriptome	365	Y
F036068	Metagenome / Metatranscriptome	170	Y
F050089	Metagenome	145	Y
F073812	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209517_100045292	F036068	AGGAG	MKRVPLFVACSLLVFGSAAMAQNKVDTKEHCPKESVSHKLDVGDVPGHSYWIGQGTCNATASDSSFAEKTSDWTEFREIWKTSINFHGRANMTMDNGDKVYLTYEGSASTDTTKPFTFKWKILSGTGKYTGIKGSGTTSMKFNADGSADDTCTGTYSLGK
Ga0209517_100045295	F050089	AGG	MARQVFVLDAPPGREVCDFCSSSPTSRLYACRNFIIPRTKHAVFQHESIGAWAACDRCALLINAGDWSQLTGRAFRRFRKKYGVPRYEEFEVREQFREIHQLFKEHMIKEA
Ga0209517_100045296	F073812	GGAG	MADPRRELESALSPLAWILNFFWDTIRLMFWFFMSPILIITWCFHHPVEARLYAVSAIPLLWNGNGGTRGLLVFFVVLIASLFGKTMHRICWGIIKLALLAGLVWYVYMIFKLA
Ga0209517_100045297	F006757	GAG	VLPPIKTKLRVALLNIAAYKEIPTPQLIAAARALPGGTKVHCPDRLTAIVLLLGTRPVEL