NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209517_10003241

Scaffold Ga0209517_10003241


Overview

Basic Information
Taxon OID3300027854 Open in IMG/M
Scaffold IDGa0209517_10003241 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22259
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (92.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006278Metagenome / Metatranscriptome377Y
F006399Metagenome / Metatranscriptome374Y
F020070Metagenome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0209517_1000324120F006399GGAMTTPALNSRVQSLVTEYGVFWQFWPQFEQIHGDRRLVGFEVELIGCHTSNLNHVDPRCPTCRTVRAALLSIANLVPADLAVGANFLTYNIDSHSGEILCLPALGNRAAVWVSIYLSWNRSNGQSLETDLLTEVRTLLNKWGIHQR
Ga0209517_1000324121F006278GAGGMFRAEIQWLASGPTLKLEGKLVADWAEQARRLVTKDVLPEGLIVDLTEVSYVDSVGEQFLKWLAGVGAVFIAGSVYAFVLCDRLRLPPMQEITERRKRRHGSSGEKSSIKYSHPVEAI
Ga0209517_100032416F020070AGGAMSATPTTCRASNVVVFGCVLVVIGACLGPSAFAQTSDSQAAEESANSWTTTTDLKSDDLLPERIPVRIIESHSQNGNRTLDKRSVEIRGTDGHFEPYQDVEKETLTLDASTVRITMRTFARDVNGKTALVQVTEEEKHILPGNNSNIVRVTYNPDVNGRLQAVQREIAQTKNISRDLEETNTTVMLTNINGDLAPAFKTHELRKRAANDTVETEKTTWLPDVNGKWQLTEIRRNIATEGAKDRGIEESVSRTNAEGRLGQISRVVSQETESTSGEKRSVVETYSIDVPGTTRDGGLHLVERTTSTESSSSTGKRATEQRVEQINPGDPASGLRVSVLVDGKLVPEPSGEQSTVIIEARDSNGHFGIVSVDTTKADRIPTVQIQQTPAEKP

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