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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027854 Open in IMG/M |
| Scaffold ID | Ga0209517_10002813 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 24144 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (83.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Germany: Weissenstadt | |||||||
| Coordinates | Lat. (o) | 50.13 | Long. (o) | 11.88 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000781 | Metagenome / Metatranscriptome | 895 | Y |
| F006229 | Metagenome / Metatranscriptome | 378 | Y |
| F007488 | Metagenome / Metatranscriptome | 350 | Y |
| F009917 | Metagenome | 311 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209517_1000281316 | F009917 | AGG | VFSISSAILLAVVSIGAQFVVFLRWIHRCMRDDEINRVFLRDLALCHLPCIYRALYRMAERQGITLDEMPIVNYVDLQNGGRRS |
| Ga0209517_1000281318 | F007488 | AGG | MTELLAICRDGVEQCSTPTGIPLRIREYDEGDLDALRAIHAAQGFPYEFPDLRNPLFLTKLVLAGDESDPAAGKGIAGAALLRLTAEAYLLLDPKRGTPKERWQWLLGLHETTRRQAWARGLEDVHAWLPSEIASKFGRRLTRLGWVRDDEWTPYCNRLK |
| Ga0209517_1000281320 | F000781 | GGTGG | MLTVAQLAPLKDRDPYLYETLTKIVSAVNAASQNAGVDPATPSPAPAPIASLQVQASNGWFDLAITDPGASRPGLFYFAESDVTPSFSAPRVHFLGAARNLYLQLGNQTLYWRAYSQYIGSQPSAPVTFGSPPIAVAGGGASGPAPLPSSGSGTLPNGLLRGGNGFGTPTGARIVKQTIL |
| Ga0209517_1000281324 | F006229 | GAGG | MNTQNDVVALVNISTQKWPPRHRTYFGSLEIRTPEAGEPFAVTAIHACKGIMDLGDKRTMEFPITAREIADDLVREINGDSGEGSFHGVFVAAGPLPTEAELAEAHRKLDAFHRRLVDAADLEWERSHNPMFITDLERRAARELKLDKPWLYDPKAQAECPACGEKIKAGVAVCRSCRAILNREKAAQFGLVPREADQPLDLGKLREKGSAK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |