Scaffold Ga0209517_10001129

Overview

Basic Information

• Taxon OID: 3300027854
• Scaffold ID: Ga0209517_10001129
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41739
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (82.22%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001318	Metagenome / Metatranscriptome	724	Y
F019104	Metagenome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209517_1000112922	F001318	GGAGG	MKRWVWVPALLVLISVAGAQTPFSLNQNHVAGQAVVADSSSGTWHDAGAGDRMFFPRDMLWGWAQLDLAPPHNEVDPNLCAGNAGQYGGANAPCSMFARYMLSGILEVRPFGRGPLRRFMVFGAPTFLFGKNVPKTLYTWSPDAIGIEHSWGAGIYIEKGFEFRVTQHFLFDRLGARDTNLGLADLGNNGPWGRYMTVGVRKTFGTRRW
Ga0209517_1000112936	F019104	N/A	MRPSPAACWTRVFPLPRHNRAVLTALSILAFALVCLAKTQQLNGRIVGYDLMKHASKAASIVQNEEVVVLETDSQKQRDKYVKVVFSSFGTTQIDQKYFDGTLTLAVDVFRDHSCDEKAPRFVSQVSLEQIGGTYLLTDAFKSSPPIKLKTLDCYVAIFKKK