Scaffold Ga0209517_10000610

Overview

Basic Information

• Taxon OID: 3300027854
• Scaffold ID: Ga0209517_10000610
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59914
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (83.93%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001265	Metagenome / Metatranscriptome	735	Y
F001829	Metagenome / Metatranscriptome	629	Y
F018838	Metagenome / Metatranscriptome	233	Y
F021193	Metagenome / Metatranscriptome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209517_100006101	F021193	AGGAG	MNPDEKQSLEQMLESAIVVSWADLMRDAPTGLIHIEYGFAPGGTLDYLKVWSSLTRGHWLLACEYWMS
Ga0209517_1000061013	F001265	GAG	MAKEDMDDLHLRIARVTDDLRTIQRDLNCAAMQAPSDPELMEALNSLSETEPIDTLRSALDQMRHFLWFYSQVMNNEPELGDKLRQAATAKTATDEPPKVESSFLDQLSRADELVLLHHLAQAKQRKPN
Ga0209517_100006104	F001829	GAGG	MRKQYLHLSTYPCDACTGPVVAGSLAVRENVISKETEIRQVGAICLSCGHRQDKATEPACARHLMPMEWAPVSAINARQQTTALVEALNRAELH
Ga0209517_100006106	F018838	AGGAG	MLPRQNNAQDPVFFQIHRNGSAVDGVSYATLEEASAVLEKAARGGEVAAVNRLDQIVRRYTPDECRAARNFGTKR