Scaffold Ga0209517

Basic Information
Taxon OID	3300027854 Open in IMG/M
Scaffold ID	Ga0209517_10000009 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027854 Open in IMG/M

Scaffold ID

Ga0209517_10000009 Open in IMG/M

Source Dataset Name

Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	348492
Total Scaffold Genes	289 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	247 (85.47%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

348492

Total Scaffold Genes

289 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

247 (85.47%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.13	Long. (^o)	11.88	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Germany: Weissenstadt

Coordinates

Lat. (^o)

50.13

Long. (^o)

11.88

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001273	Metagenome / Metatranscriptome	733	Y
F005355	Metagenome / Metatranscriptome	403	Y
F017345	Metagenome / Metatranscriptome	241	Y
F021344	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209517_10000009112	F001273	AGGAGG	MRIDRYTKSILTLIALLLAVIVLKPFFQPQPAMADGKYVGVQFSYSGGNHAFFDTRSGDVWEYGDNGQFRQHYKVHEFGKDHDRDHGR
Ga0209517_10000009128	F021344	GAG	MRRKRKQILDKGVEARRRARNSGLSPAVTRVVADKRKKPPKHRKDLLPEEV
Ga0209517_10000009285	F017345	AGGGGG	MLRPRLFSIRTVTGSAVLCLVLIVSSRPAIAQTNEGDYILILASGFLCDPDHAEACPAVAKDANGSSFEMSGAGTFSLHDKSVTAAGTFTRKSPSGTLLDTGVWLAASLVSFDSYGAAPNALHGQGMGFGPRARGPGRMQAILGPMSTGGLAVFRIRLLSMSGASKTAVLQVNCALGEVPRERSVEGIRLKLERSDTEYTQEAGGRLMILAVRAGIVTPGKTPNHETSPEIPESPQN
Ga0209517_1000000941	F005355	AGGAGG	MSNIRHDFSWSHMGRVCMIFSAAVVVVSAPTTMVANTKPTEVPAKVIAHLPLQEAPGSEMLLQTKGDKHFLYVQKASKQGFAVIDVTKPELPTLVNRTAPPNDATAGKLEMAGPDVGLAEVPDKNSKGVIRSTDNPTETVKILDLSDPAHPKVLQTFTGVTSILQDANRGLIYLANNEGLWILNHSRPGLTPTKKKPPCGSEDALASMPPDCQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209517_10000009

Overview

Ecosystem & Geography

Associated Families

Sequences