Scaffold Ga0209274_10032564

Overview

Basic Information

• Taxon OID: 3300027853
• Scaffold ID: Ga0209274_10032564
• Source Dataset Name: Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2423
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003832	Metagenome / Metatranscriptome	466	Y
F005268	Metagenome / Metatranscriptome	406	Y
F025325	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209274_100325643	F025325	AGGAGG	MLSHGPKERLEKTWEELVSAAFMETAPEKLATMSEEIFAALEERERTLSLPQNPSGFCERPTEK
Ga0209274_100325645	F005268	GAGG	VNRSDDEPDELQVWRVLSEAGLVEIRLDEFAERIRDVKRVVTGRLFDLLNFNTGVQERESAAYSLGTLKELELKVLANAPKPPDPSKM
Ga0209274_100325646	F003832	AGG	MKSTAKQLSTAGNWPPEKGQIISLRSSTASETAILKEVRWGLVWRDFVLEDGRVIPEHRISGCPQPQAWRKISEVTDQEREKCEERLLSMARAGMDPRERDQSFWAELNQYLAYTYLRFKPAGSKLQDTER