Scaffold Ga0209274

Basic Information
Taxon OID	3300027853 Open in IMG/M
Scaffold ID	Ga0209274_10000105 Open in IMG/M
Source Dataset Name	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209274_10000105 Open in IMG/M

Source Dataset Name

Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	74650
Total Scaffold Genes	57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (78.95%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

74650

Total Scaffold Genes

57 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

45 (78.95%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location Name	USA: New Hampshire, Hubbard Brook experimental Forest
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: New Hampshire, Hubbard Brook experimental Forest

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000214	Metagenome / Metatranscriptome	1570	Y
F002165	Metagenome / Metatranscriptome	588	Y
F003631	Metagenome / Metatranscriptome	476	Y
F004157	Metagenome / Metatranscriptome	450	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209274_1000010535	F004157	GAGG	MTRLAFALVMAMGAIAWGQTGAAPGSSSATDQTGQTSQVQGQAQDGDKGLVIEPEELPGTYPYGTYLVNLHVQGNYVPVLHWRIEKGALPAGITLDESGVLRGAAEHAGEFQFVVSVRDGDNPQRAVQRAFVIKVTEAMTLEWGVPAHVTGNRIDGTVAVSNTTADDLDLTFDVKAVAENGRATEIGYQHFPMKRGTIAMALPFGDTLPHGAYVIYVNLVGEVAKRNVIYRQRMQSAKALQVLVEY
Ga0209274_1000010536	F003631	N/A	MELLLNLAWVLLALPAYWLWRRDAEARVARRVSSPQCLLALGCVLVLLFPVISASDDLHAMRAEMEESASSKRSVRQASSDKNSAWVNRLQGPPAAVAGAVWLVAPEVEPLEISVLCVAPLARPSVVHAGRAPPFSLLG
Ga0209274_1000010540	F002165	AGGA	MPEKSDSSVEEVLASHRLELERLKNALGLLGVSACSQCKAFLRRSDPGALFDAGELVCYGCIPEWWPQRCAQLGAKERESLEGKLVFWLRDQHHAETFKDPAKLPESSLQELHIIATCLECHGTGKSLGQDHCRFCEDRGTVWVIVSRKQG
Ga0209274_1000010541	F000214	AGG	MKNVYEVLRQKEMELTRLEKEVEALRLVAPLLSEEKEMNSDMVKPALATAVNGPQQPIRIPAPPVVTSAQPVRAAGWDDTAKRWP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209274_10000105

Overview

Ecosystem & Geography

Associated Families

Sequences