Scaffold Ga0209345_10004991

Overview

Basic Information

• Taxon OID: 3300027852
• Scaffold ID: Ga0209345_10004991
• Source Dataset Name: Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 7 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12539
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (8.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine → Marine Microbial Communities From The Santa Barbara Channel Oil Seeps

Source Dataset Sampling Location

• Location Name: Coal Oil Point, Santa Barbara, CA
• Coordinates
  • Lat. (^o): 34.39225
  • Long. (^o): -119.845662

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001728	Metagenome / Metatranscriptome	645	Y
F007114	Metagenome / Metatranscriptome	357	Y
F024892	Metagenome / Metatranscriptome	204	Y
F064116	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209345_1000499119	F001728	N/A	MNDIKIKPTDKKDHYRLVLNGVDVTGEQERSVFRHIVETIDNGIGVGI
Ga0209345_1000499121	F064116	N/A	MKDLIDFKNAQIEALQKKVFELETKVSTYETYIFELTDKDCPTQYKDIVKNELLKTE
Ga0209345_1000499122	F007114	N/A	MINTEAWEKLRKQIEYHLEEDSNLTDIRINYQVKKPERGTRNYLGLNVNVNS
Ga0209345_1000499124	F024892	N/A	MALRKIHKRKKESFSLHKVEYTDTYTKEMDCEGLAVLKWSMFDSPDKLGSGKYFMESEPIFILDEVFRKERISGFILMGYVSKTYADRIAIPSNSSHRVGKAVKFKCINKAKRFRMIRGLIQYGIERINVSNDWIYFDTDNYLKEQEFALF