Scaffold Ga0209066_10062906

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209066_10062906

Scaffold Ga0209066_10062906

Overview

Basic Information
Taxon OID	3300027851 Open in IMG/M
Scaffold ID	Ga0209066_10062906 Open in IMG/M
Source Dataset Name	Freshwater microbial communities in response to fracking from Pennsylvania, USA - Allegheny Zone_MetaG_DW_15 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2630
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location Name	Pennsylvania, USA
Coordinates	Lat. (^o)	40.0132	Long. (^o)	-79.0717	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023840	Metagenome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209066_100629062	F023840	AGAAG	VKDEHGHLRVGLTLEDDFTLTRLKNTAHSLKGEARDQYLWKTIFRFVCRERAYKSVMEEIGVAIDTNVDIFEDSDDETD

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