Scaffold Ga0209712_10142935

Overview

Basic Information

• Taxon OID: 3300027849
• Scaffold ID: Ga0209712_10142935
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1370
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean
• Coordinates
  • Lat. (^o): 79.0225
  • Long. (^o): -9.5247
  • Depth (m): 17

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068873	Metagenome / Metatranscriptome	124	N
F099354	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209712_101429351	F068873	AGTAG	LSNSLHVWPDGGLLDSADTGGTFNGGDHDVTLISPVWSPGVSDDVVRLSVLVSISDSGDGVIELGSASGGVENTTGVTLESHLVGFDGNRDWSLGDSSKKLAGRVGLDGVDLGDESFWASSLLARAGVSRSGGVWVFSLGGLSVGGNVFHTLGLPSTSASIAGGVARDELLFGKAQKVSTLLDELSGLHGGGSRESPA
Ga0209712_101429352	F099354	N/A	LVLDGVNGSEGSPVLGGWDSFGGEDGWLGSGLVSFESENLFVFLLGPGGHEVGSDGEGVCWVSVDLGEFGNLGVEDFLSEHVFFLGSVGDTVSSDVLEELGGGIDVFVFAEIGESEGEGGFAERVHLFFLNY