Scaffold Ga0209712_10043933

Overview

Basic Information

• Taxon OID: 3300027849
• Scaffold ID: Ga0209712_10043933
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2742
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean
• Coordinates
  • Lat. (^o): 79.0225
  • Long. (^o): -9.5247
  • Depth (m): 17

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024892	Metagenome / Metatranscriptome	204	Y
F030762	Metagenome / Metatranscriptome	184	Y
F064116	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209712_100439331	F030762	N/A	TLDMQDIKIGAINLLTFTVSFSNIEQWLKITLLVVSIAYTVLKIFKMSNKDKDNEQIL
Ga0209712_100439336	F024892	N/A	MPYKRKKESLSLHKVEYTDTYTEEMDSEGLAILKWSMFDSPDKLGSGKYFMESEPVFILDEVFRKERISGFILRGYLSKNYADKIGIPSNSGHRVGKSIKFKCINKAKRLRMIRGLIQYGIERINVSNEWIYFDTDNYLKDQEFVLF
Ga0209712_100439339	F064116	N/A	MKDLVDFKNYQIEALQNKVFEQDRQISTLETYIFELIDKDCPEEYKGI