Basic Information | |
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Taxon OID | 3300027849 Open in IMG/M |
Scaffold ID | Ga0209712_10009897 Open in IMG/M |
Source Dataset Name | Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7094 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (95.65%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Arctic Ocean | |||||||
Coordinates | Lat. (o) | 79.0225 | Long. (o) | -9.5247 | Alt. (m) | Depth (m) | 17 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F045552 | Metagenome / Metatranscriptome | 152 | Y |
F087017 | Metagenome / Metatranscriptome | 110 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209712_100098974 | F087017 | AGG | MLKITNTTTEKDGTFGTNTNYTVEGSVALALDSIWDYDGKVDVNVTGIQVYTHMEDDGTDSNVDVNVAHDAEWNIYTDSGFESAVSNLLGFDVQFTEQGMQDDGYASMEVA |
Ga0209712_100098975 | F045552 | GAGG | MQTLTQHEKDFVVEFLADVLHGLTINNVLSRQEGNGFIRMADAQEVLSNLEMLYNKHDDEEDFVLNETNATWTFTLDDAQTALRSYDTEYRDCIVEQFEDACEAACTDADKVLLNADYTTLADRINNY |
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