Scaffold Ga0209712_10004512

Overview

Basic Information

• Taxon OID: 3300027849
• Scaffold ID: Ga0209712_10004512
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11046
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (62.07%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean
• Coordinates
  • Lat. (^o): 79.0225
  • Long. (^o): -9.5247
  • Depth (m): 17

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018271	Metagenome	236	Y
F053567	Metagenome	141	Y
F053569	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209712_1000451212	F053567	AGGAG	MNINSLTNVTISGICTADYPDFVDAYIASADDANGNPLSDEQLEVLTNDHQEFVQEMAHDEMMGWV
Ga0209712_100045127	F018271	AGGA	MNSLTNHCHVTNQVNAYTDEPTDTPLDGVFDDCSPLKDIYAALMFKRKVTFQAGWNYEPTTYTAFDILLDRINENADTTDLAASIFAAALFNENKGEIATDLAQASDFEAWVYDFFKYLQNSKPAPFTKPNLEFLNVRGA
Ga0209712_100045128	F053569	GGAG	MNVDIYLEVLSDLHKLWEYSNPYCKKLNAEKHSAYKEAALKIISGIDRGEV