Scaffold Ga0209712_10004119

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209712_10004119

Scaffold Ga0209712_10004119

Overview

Basic Information
Taxon OID	3300027849 Open in IMG/M
Scaffold ID	Ga0209712_10004119 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11647
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (96.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean
Coordinates	Lat. (^o)	79.0225	Long. (^o)	-9.5247	Alt. (m)		Depth (m)	17
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012624	Metagenome	279	N
F012723	Metagenome	278	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209712_1000411921	F012624	N/A	MLTNYKGNSAHLKALKLARIEQTIADGVVYLSLTLGALALLSFLNWAIIARYGA
Ga0209712_1000411923	F012723	AGTAGG	MSNDDIKAYFDGSNITLAELSAMTGKSIKQLKTILMGG

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