Scaffold Ga0209712_10002351

Overview

Basic Information

• Taxon OID: 3300027849
• Scaffold ID: Ga0209712_10002351
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15617
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (9.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean
• Coordinates
  • Lat. (^o): 79.0225
  • Long. (^o): -9.5247
  • Depth (m): 17

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005817	Metagenome / Metatranscriptome	389	N
F008695	Metagenome / Metatranscriptome	329	Y
F022015	Metagenome / Metatranscriptome	216	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209712_1000235114	F022015	N/A	MRQYRTWQQAFDEMNASVLKHEIICAIASEVVGKPVENLIGFNDEQRESVWCDYYNTTEL
Ga0209712_100023512	F005817	N/A	MRSNLLSRLKPEFKQGLEDNKTRYPAAIHDLEFILSQITFYNDLTVNQVLNLFLFSDMQYLDRKNFDWRYGEDAFELENNVA
Ga0209712_100023518	F008695	N/A	MIKEYEISKVTHEWCESNDRWIYIEYNAQSKIIGLNFMQGDEYEYFKKNWARNNPYLMVFYKTMLHTFPIEKASVSTLDFINKAMWAYCEVGTVSHKDHNEIK