Scaffold Ga0209712_10000110

Overview

Basic Information

• Taxon OID: 3300027849
• Scaffold ID: Ga0209712_10000110
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 69697
• Total Scaffold Genes: 105
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 88 (83.81%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean
• Coordinates
  • Lat. (^o): 79.0225
  • Long. (^o): -9.5247
  • Depth (m): 17

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062793	Metagenome / Metatranscriptome	130	Y
F104567	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209712_1000011082	F104567	GGAGG	MYQQHLDLQFPLTQQLGLNLDVPVDQRPKFYVDTSKLTIDSTFNSVGTISSYFNFNDPDGTVMARMDDTGLSIKMENNSWLKTKVANWLGVKYL
Ga0209712_1000011094	F062793	AGGA	MLSFVELREKTTKIGSGETEVKSYKGGKRKKIAVQVVQKGKAFSVYIDGEKLDDNFKSAKDAEKSANDFIKLMGEETES