NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209390_10554685

Scaffold Ga0209390_10554685


Overview

Basic Information
Taxon OID3300027848 Open in IMG/M
Scaffold IDGa0209390_10554685 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-01 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)735
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Bonney
CoordinatesLat. (o)-77.714Long. (o)162.445Alt. (m)Depth (m)83
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007211Metagenome / Metatranscriptome355Y
F026203Metagenome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0209390_105546851F007211N/APHINTFEGDSVFKMTLLEAPTGTFLFYYKDSKQKIVHTLLLEEYGLSKKWVIIMDRRQDLNVTLTPARKSGPSAQDRYSARGFGGGAKKRRANEKE
Ga0209390_105546852F026203N/AFVAINFLTASTGQSTHEDIVKKSGLRRILFDKSCLRRILFHKKSGLRRILFIKIPLHNHSGMHFISSFLF

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