Scaffold Ga0209390_10106663

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209390_10106663

Scaffold Ga0209390_10106663

Overview

Basic Information
Taxon OID	3300027848 Open in IMG/M
Scaffold ID	Ga0209390_10106663 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-01 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2641
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location Name	Lake Bonney
Coordinates	Lat. (^o)	-77.714	Long. (^o)	162.445	Alt. (m)		Depth (m)	83
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014584	Metagenome	261	Y
F063380	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209390_101066632	F063380	N/A	MTVYQVQMRAVMIVVRVWTGFGTADKGWREGPDCWGLQDHKKVIVCAEKF
Ga0209390_101066635	F014584	AGGTGG	VEVDRHIVCDTGGERIAEYFALLDQGDIMFSYEVVVKDRVGVRFSEKGVWSEGRRRDRKTAISDNKFERIDHIQE

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