NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209390_10092622

Scaffold Ga0209390_10092622


Overview

Basic Information
Taxon OID3300027848 Open in IMG/M
Scaffold IDGa0209390_10092622 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-01 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2883
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Bonney
CoordinatesLat. (o)-77.714Long. (o)162.445Alt. (m)Depth (m)83
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000489Metagenome / Metatranscriptome1084Y
F024486Metagenome / Metatranscriptome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0209390_100926222F000489N/AMFHENRILNQRPDGIVINTENHQTLYILEFKWSSDRSEDLLGVKEVEANEQHKGIIEALRAAVQEWTYEQINFVAGRRGAVTVVEADFYNKLERLSVQAGNKDKILAAHVQRICEAHDTVIQSYYQQIHGSSGADATTSMENLGEQVYV
Ga0209390_100926224F024486N/AMEKKTSQTAASKQKPQQDRRWIRMEAKGSQCAGKRGGDRATSNAQ

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