Scaffold Ga0209390

Basic Information
Taxon OID	3300027848 Open in IMG/M
Scaffold ID	Ga0209390_10040101 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-01 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027848 Open in IMG/M

Scaffold ID

Ga0209390_10040101 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-01 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4716
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (18.18%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4716

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (18.18%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location Name	Lake Bonney
Coordinates	Lat. (^o)	-77.714	Long. (^o)	162.445	Alt. (m)	Depth (m)	83
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Bonney

Coordinates

Lat. (^o)

-77.714

Long. (^o)

162.445

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013023	Metagenome	275	Y
F013136	Metagenome	274	Y
F018328	Metagenome	235	Y
F034073	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209390_100401011	F013023	GGA	MVQQNQLIDMYNHFRLLTSESWNTQNRWSSIGFYPDVAESAGFSSADSIYAPAGQSANNDTLNVGLAERLGYVLDDAGETFSGVATSPLSNLISKTELAKLYVSHVSNLTAGTADVKSPVVQYSVKATIMLKDLHPLFEVMPISKSLNFKIQIFWNNSVVTATHDGTDWTAQSSQYRAYN
Ga0209390_1004010111	F018328	N/A	PAGSLRASVYVGDTCHDSTQKTVTNNGLSTGGVGKQVELWVPAYQMLPDVEMSYAHNHLRDTSYHDYYQYGLKNVASGESFNHFVSNGISNLKAVLIIPQLNSLNNNVNAFDDGLPQLMGHINNFNVLVGGSNVLHQDSRYTYQQFNNEFFHEFGIKGNQSSGLCSSLINFKSWLKKPYYYVNCSRVPLEQQNAYRSLQIKGTNSSSLAVDYVIFAIYSKLHSLDVISGNITKTD
Ga0209390_100401017	F013136	N/A	MSNVCVFFCLACIIFLSISIFRTKNIINDASIYLDLFEDLDKVDDVYKNKFVLSLFFTDTKNKTLLLGNNNIGMSIDNKIDNRFSIENKKLRH
Ga0209390_100401019	F034073	AGGA	VYDTGTEMIGNKRHLGGLSDALKKSKKGIISKLTQLSGLGLKLGDGVMKDARYRRPITMGNGMRMRGGGGACKGCGMEYNDKFVFSNVAL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209390_10040101

Overview

Ecosystem & Geography

Associated Families

Sequences