NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209402_10664511

Scaffold Ga0209402_10664511


Overview

Basic Information
Taxon OID3300027847 Open in IMG/M
Scaffold IDGa0209402_10664511 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)578
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)77.0991Long. (o)-150.2252Alt. (m)Depth (m)213
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011406Metagenome / Metatranscriptome291Y
F101847Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209402_106645111F101847N/AVSVSTSGKVKIKGVVATLKEILEVLIDEILNHTHPTGTGPSGPPMPPATVNLALLKSLKIGMSLE
Ga0209402_106645112F011406GAGMALIKATLMMELAGYFAAPAPDPMKPGKDIAKAYKNYLLMGMNAGGFPASAVTAAQPTGMTIGGVFAQQLPVGAAIGSQIATALTTMALSFMSGQQIGPPVAAPSHTPQLIQLFSGPQPAGMAFAKE

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