NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209402_10642115

Scaffold Ga0209402_10642115


Overview

Basic Information
Taxon OID3300027847 Open in IMG/M
Scaffold IDGa0209402_10642115 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)593
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)77.0991Long. (o)-150.2252Alt. (m)Depth (m)213
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070575Metagenome123N
F077807Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0209402_106421151F070575N/AMILELGRERINMPINLWDKEFNRQYKEILRDYLDDGYDLAEAKTLARKDTKEIMKDQLDFVEELYDNTLNDLD
Ga0209402_106421152F077807N/AMSKTGFTDWVHKEIQLQQQQRKKIMAKNLKEQQHGAIVIDQAQKKLILDLFNAGREVFDEFDLRCVRAWDLKQLEDLIDDMKDAFGIVPKISEYKHDDGSVMPSHFQDHVWSDDPRAWKRKD

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