Scaffold Ga0209402_10527190

Overview

Basic Information

• Taxon OID: 3300027847
• Scaffold ID: Ga0209402_10527190
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 683
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 77.0991
  • Long. (^o): -150.2252
  • Depth (m): 213

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035963	Metagenome	171	Y
F059346	Metagenome	134	Y
F067823	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209402_105271901	F059346	N/A	ESAWALFVAIGWFFINRITAKVDALEKDKADNSAVGRHSELIHETDRRIDELQHTTVPRQEYKSDIGALHIRANELERSKEDKVTDIRIVSGDDFKTPKKGK
Ga0209402_105271902	F035963	GGA	VDKINEVVIAVSSGTLGICLWICKRMFKSIDIAHERLDKLESKQVDKQYLENQLSPIRVDVNIILQHLLANKNREK
Ga0209402_105271903	F067823	GGAG	MEMIMNQSWFQIAGEIVLMFTALTGAMPDRFVNKIPVLGKLWPIFN