NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209402_10351549

Scaffold Ga0209402_10351549


Overview

Basic Information
Taxon OID3300027847 Open in IMG/M
Scaffold IDGa0209402_10351549 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)903
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)77.0991Long. (o)-150.2252Alt. (m)Depth (m)213
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097139Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209402_103515491F097139N/AVLKMKLLLENWRKYLAEETDATGPMEPWLIKKRKRQEDALKDLEIMGYSIRRELGRGAFGVVYEVENSRTGERSAAKVVSANNKQEVENYKFAMDEKAFMPEKYAKYLPKVKKIITGGGSEDEEDNKGKSTVILMELLEPLDPQTAQELFAAQDAPTASKKPEKILKDPEAVAEIVEKAIEHNRILGQMRLTPEQYSEITSVAVNAATQSPHSDVDGLIWTVYSAAIRSLDYQSPAMNKAFEKALKDTILYYFDKQIIPVHQPEEGEDPYDTWTSGGLPKTSALFPEAEGLMEAMKYFMQ

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