Scaffold Ga0209402_10299702

Overview

Basic Information

• Taxon OID: 3300027847
• Scaffold ID: Ga0209402_10299702
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1003
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 77.0991
  • Long. (^o): -150.2252
  • Depth (m): 213

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001625	Metagenome / Metatranscriptome	661	Y
F017844	Metagenome / Metatranscriptome	238	N
F031648	Metagenome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209402_102997021	F031648	N/A	MVEDNHNVISFNADTIIKGNHGVIVSVYVSKTGSSGSKVVFKNGTTTSGVTEFTIFSEQQGTYVGINRRFESGIFADITGSAEY
Ga0209402_102997022	F001625	N/A	MAITISTSDWTNANVRKTLSVQAALVSKLRIYSIKVTFGASDNYATNGVSADLKEGRISTLVAVIPTYSTCLQEVRYDKANEKIKILEVGGSAGSAMTELANASSATNSKVFEFLVIGY
Ga0209402_102997023	F017844	N/A	DSGDASEVGRLFALDTSDAEGYGYPRLGIQIAIPTEYYEATRRTPAYPFVNNAFVEKGVFRTMGETVCRHFKSQGKIRDIKL