NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209402_10247415

Scaffold Ga0209402_10247415


Overview

Basic Information
Taxon OID3300027847 Open in IMG/M
Scaffold IDGa0209402_10247415 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1138
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)77.0991Long. (o)-150.2252Alt. (m)Depth (m)213
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015413Metagenome / Metatranscriptome255Y
F029595Metagenome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0209402_102474151F015413GAGGMESNDLEKQVESLLATPQFEQPQFEQLLPRGIFGKDMLIGSAGTALSVQVGNIVGKFLPIGQLPVGTSSIIAGILIQKFGGNSSMLKKLSEGIIQGGIATAMTPFTSGLIPSFNQEVKEVTQELNPLVKG
Ga0209402_102474153F029595N/AMKCFESPSGMKNPILWHKRQSVRDFVKQKPMFSQLMAESKNCMLNHPELKNNVKGAIQCETIHPATMSQFNNYTFHTHPHNIPYPSEVDKATTKRLKKKYLLIGVVPQNKTYVFSDDDNFQKHISTI

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