Scaffold Ga0209402_10163495

Overview

Basic Information

• Taxon OID: 3300027847
• Scaffold ID: Ga0209402_10163495
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1479
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 77.0991
  • Long. (^o): -150.2252
  • Depth (m): 213

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074007	Metagenome	120	N
F093386	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209402_101634951	F074007	N/A	MNVQERVYGKYGNNLTYKKELLDIVDDLGGQLLFFMHISRWDLPLKNRWLDYFKYRFKPDKKFYIIFEEEEFSTHTVLDLDMVVDFFKENGVDKDKLIWVTASHNFNDVLKRFNKYIEIKSIPLHWGDSRGCRDRRFMEEVTVKSIVKDKVINYDVKSFGFNSSFYNLNYITDENFLSAI
Ga0209402_101634952	F093386	GGA	MKNINIYIHTWKINNWREILNEQLSQIDDSGLGDIASIHICNSDAEKKTWFEMWKHSFDNDSYYLYLQNLGISWQGTKYEDITTNWRKWVMGGVVENWKEYISYLDEYDAVGDCWKDVAYFRDFFSNIPKYKDSDLTYPQHFATQMWWTKSSHLSKLENPFEHQKYSVPEHGNPRVIMEGWLTSHGENFKELRNDLSKEPAEAYINQHLKNMPK