NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209402_10043751

Scaffold Ga0209402_10043751


Overview

Basic Information
Taxon OID3300027847 Open in IMG/M
Scaffold IDGa0209402_10043751 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3278
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)77.0991Long. (o)-150.2252Alt. (m)Depth (m)213
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014792Metagenome260Y
F025386Metagenome / Metatranscriptome202Y
F092712Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209402_100437511F014792N/ANYSWGIIQDMIEREVSSAFKLREPTKMPSKKEIKQIIKSTVKRERK
Ga0209402_100437513F092712N/AMTNKTSFGKYFDDQHDRIVKNMQNKNKQQNVEWMEAYEKREQLKDYNHRRSIKMPVDSTTIGT
Ga0209402_100437516F025386AGGAMETSYETEVKNTAASTWAGFWFMVFITSLIVASWGEPDLIDALIYHLSDGYYK

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