Scaffold Ga0209402_10040606

Overview

Basic Information

• Taxon OID: 3300027847
• Scaffold ID: Ga0209402_10040606
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3426
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 77.0991
  • Long. (^o): -150.2252
  • Depth (m): 213

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041251	Metagenome / Metatranscriptome	160	Y
F049037	Metagenome / Metatranscriptome	147	N
F060975	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209402_100406061	F049037	N/A	CVEGARACSDFKLFYDTGKITHHDRSPNWYIDMPSMAITVRELSERCGFGKETNKLKHWLGLRVYRLIEDPLGFYFLRHLDGGIEDLHEGKSSKRLRYAKAACSQVVLEAKAREGTTRQYDHLGAVVRRQMGRNVAALRSDEDQGEEQQRTWVKLSETIW
Ga0209402_100406062	F060975	AGGAG	MGKTIRNNLVAKHSEKYNKPKTVRDKKKDFYRPDSKREFEEAIEDLGFDEYNRKDAIITQYQDDQARSQEDGWPYED
Ga0209402_100406067	F041251	GAGG	LKDYHIQDIQEIAEAIKSGEQIENDIGTVMDGFFWFPDEIAWAAKWQKDEKQDSPYHYFAMLLDPDVFKDTDDDDEIMAGIEYWWHRSQIYAAAYLVNNKPLVASRFTEDIANESLKDLIAMQSEVRDAFKEQGMEVGLKAKPKDIWMVVRTTAQNIHNNVRGIH