NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209402_10038789

Scaffold Ga0209402_10038789


Overview

Basic Information
Taxon OID3300027847 Open in IMG/M
Scaffold IDGa0209402_10038789 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3521
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)77.0991Long. (o)-150.2252Alt. (m)Depth (m)213
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008914Metagenome326Y
F020257Metagenome225Y

Sequences

Protein IDFamilyRBSSequence
Ga0209402_100387897F008914AGGAMEREAIVEETRKWVRSWEAEQREMVLWILEEEVRHDKLMNFMHEDGGKTTPEKLN
Ga0209402_100387899F020257N/AMSYWKPDCGYVCWVSGGYKIKEVNYGVIPIGDLRPPSGAYALQEALKSGHDRIEVFGFDSIAGVFSTTSTIAFKEHDSPNDIIEDRMDKWITFYKTIAEHYNEIEVIWHTKED

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