Scaffold Ga0209402_10033403

Overview

Basic Information

• Taxon OID: 3300027847
• Scaffold ID: Ga0209402_10033403
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3853
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 77.0991
  • Long. (^o): -150.2252
  • Depth (m): 213

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004537	Metagenome / Metatranscriptome	434	Y
F094795	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209402_100334031	F094795	N/A	PFSNLLGKAEAKAIQTLGSNIETLQSVKQSNLGIAQSILDLERSTADVKISQQQTELDRTQSYIGSQQKIGASAGFASLAPKGDWQNAAQALLSRITNTNAGQSVFPDFRLIANQQNFGIVAQQAQYEIAQGNIGKANEMVQRQQGEIDRLNEEYQTRFGSLSRYG
Ga0209402_100334035	F004537	AGGAG	MPFSNNIVNNYQLNSGNTPLLYPVRVICLAGVTTGISFPDQFLGRAISLKVTNNDAANAASYDYNLNGQFQNLAASAFSTIDNTVVNYLTIIAGAAGTVLVEAQVLPASRSEIPIEVQV