Scaffold Ga0209402_10000567

Overview

Basic Information

• Taxon OID: 3300027847
• Scaffold ID: Ga0209402_10000567
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44154
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (77.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 77.0991
  • Long. (^o): -150.2252
  • Depth (m): 213

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007138	Metagenome	357	Y
F012920	Metagenome	276	Y
F032623	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209402_1000056717	F012920	GAG	VGTKNKLIKGLTCIWFMLYIHSMKKKLINEVREIKRKMSLPLVRKGPRGELVPPKFSKRENELLLEMVTRRSKRHPVGGGHISAPMKMHKNRLKRGEGHNEKGEF
Ga0209402_1000056729	F007138	AGG	MFDKTIKLTEPYPSDFKPTMSVMEIQKHFSAFGFEDARMLAGAKWDYTEEHEGDLIVFNANVLMSGYGKVWFGDLNLTEDYKTLKKISESLNTTLYILWEMDARFGKEDKPIDELIGKAVWNTTEDKPTIEWYRNKVKYEEIQIDGC
Ga0209402_1000056771	F032623	AGGA	MYNDPNTWIWVVIYTMPLAAVVWFLGMWLTHEDYKKEHNIIGWSDKEMNAKQIILTTIVSTIVGTTGWLGGVYYGSVNMLDSIYGNVENELDILESKLEDVSTKKIESQLEQLKIKVLNKVPTKQDIIDMSAQVDGINERIVMLASETQSLISDLKYSVREDLNKTTTDLTNTVESSITAQSDSVKKEIGKLYDKVDVLYKELTEVTTIIDKAKNTFFGKSVFKEKK