Scaffold Ga0209180_10050705

Overview

Basic Information

• Taxon OID: 3300027846
• Scaffold ID: Ga0209180_10050705
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2289
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026411	Metagenome / Metatranscriptome	198	Y
F027294	Metagenome / Metatranscriptome	195	Y
F041398	Metagenome / Metatranscriptome	160	Y
F080432	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209180_100507052	F041398	AGGAG	MTKLRIQVALYIFVLSAAVAVFSGVVPVPFLNAGKHNLGAIQSNGVVTLMADGGDPQPAPTPLPWLGVAS
Ga0209180_100507054	F080432	AGGAGG	VAIRKGERWLCQNPRCRSEILVTISSRMPAGSKPRCSCGEFMKKAYVRPELSTFESANQADRTFEPSQS
Ga0209180_100507055	F027294	AGGGGG	MRVFRPFAILLTVALISPGVFILYDSMARPSAPAFDSVRAGVVLFSIALPLPHFLSRPAV
Ga0209180_100507056	F026411	AGG	MKGREQEANAAFAEASFGTECRAEFIFYARKPASESRSVQVLGDYACDFRRPDWAHRWSDWSSGRNRYLNLFLCAKHARELGLM