Scaffold Ga0209180_10007858

Overview

Basic Information

• Taxon OID: 3300027846
• Scaffold ID: Ga0209180_10007858
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5453
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000232	Metagenome / Metatranscriptome	1513	Y
F008569	Metagenome / Metatranscriptome	331	Y
F009565	Metagenome / Metatranscriptome	316	Y
F031940	Metagenome / Metatranscriptome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209180_100078581	F009565	N/A	LVYLKLMEKYQNTDPFKYILYSAKIGEQTPAMATGK
Ga0209180_1000785810	F031940	GGA	MRMPFCILNVLGDVLDDGELYFVEAAQSLDAARARVESLAESLPGEYIIYDVATGERVSITAVGKLH
Ga0209180_100078588	F008569	GGA	MDSTRRACPKTIVKITCPLCGKRFDQDAKDLLQIGSQLQNLVFGRPVRSVQVDYDCPYCSDRGILVSLLHTDLSWDELSKEHVQTAVCDNGFCSQRGVFQELKPSRVVLGSLNPVELRTGNYVRNYRAFP
Ga0209180_100078589	F000232	N/A	MKHPKQTKRAPPTRPSALAVPSYHRILVKHGLIEKTLSIPDAYEMFLKVGADPEVQILRRKVAHGHRMKHVPALYLATAMALQGMTKQELEALKLRMEEKRV