Scaffold Ga0209180_10006174

Overview

Basic Information

• Taxon OID: 3300027846
• Scaffold ID: Ga0209180_10006174
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6062
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000232	Metagenome / Metatranscriptome	1513	Y
F069910	Metagenome	123	Y
F073134	Metagenome / Metatranscriptome	120	Y
F073138	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209180_100061741	F000232	N/A	MKHPAQNKRAPQTHRSALAVPSYHRILVKHGLIEKTLSIPDAYRVFLKVGADPEVQKLRRKVAHGNKMKHVPALYLVTAMALQGMTKRELEALKLRI
Ga0209180_100061743	F069910	GGA	MKRGNVSSLKAKSRPDALIIRARINSGEPEPIRMLRSSKEPELGQIFRGVPTRFSTNLFQKTLRVESISVEKGINVFPLHNRCNGGPLNDR
Ga0209180_100061747	F073134	N/A	MIPPFDIFRVEIDGHLVWKGTAKTLDLARLRIKILIDSEPADYLIHSQQTGHKMVVKADGSIAER
Ga0209180_100061748	F073138	GAG	MALPDTEYPACPEHEISMVPHTFDTRDVSLLQKTVEGFRCPNLDCSIVFVEGTLRGFYTLEPSGHLTPYLKSGQQ