Scaffold Ga0209180_10001453

Overview

Basic Information

• Taxon OID: 3300027846
• Scaffold ID: Ga0209180_10001453
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11774
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002498	Metagenome / Metatranscriptome	553	Y
F004048	Metagenome	455	Y
F028125	Metagenome	192	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209180_1000145311	F028125	AGGAGG	MGSRASMARMPVFLLVGIILSTIPLASDTFPSFQSSAAASTINPPTLNSAAINASMRQVLTWAESRVLPNGTATLQGTSNNLWATSLVGRTLTYLQLEIGNSTTRTIIQNMTKAEHILLQNPSFVNYGIWSPANLNSQFQVHLDAQKFLSRTYGLTLDPTARSDLINVTQNMHLNLPLRSDYFDTVAWTLSNAVWFAHYSGSSLPPPSDFATAVQDLNNNYNLSGASSAAADPLIDFAKLLRFLKPITYTDSYFRLQGNSLSPSYQTLETGLANQLVKRQQSDGNIVTVNPYKSYLVEDFARDLDSSVYLHNNLTYAYSAYRAESYLTSLYLQSNGNFSLPDNGEGLYPTGTYHMLSIANDLRSCSSTAWYNILTSSSKLLNYTLTAQYPDGTFRFFLNITNPGNALTTVNTVSGLVDSYIVIRNTNVLSPEAPVSLATCQTTSSPSLFQNLSWLYIVVPLALIVAFAIAYERKHRAKYRGLVEK
Ga0209180_100014532	F002498	GAGG	LTKEEHGLFFDAMQRLGLPNEVKLAAVALYLDFKSRPIGEYNADHKNLEIFLIASVSLAAKAMGDLRTDHEFESKMFVRKERLADAEERIIRSLGVQDSIIPISDLVSQLTKRHIESMAEGFAERELVSSSEKTELVQRSYEYLDAAVVKGLNPKMSYRGRAAGVMLKAVQDLGLQISETDIARAAGFDKRSMEINRDVIDALLKD
Ga0209180_100014534	F004048	N/A	LDRLRRRSWYERIKTGPSPEDNALLQLTRELSVQFQMPYWYRQIAWGRLDRYNSTGWIISKPTILPKETVTVPGSLPVAELMLPEFLKGKLSLDEWKILIALHMVRFKAYNQGRMSRLLGKIALVPRGLFFLLLFYIPAAASGGLSGPVLYFPSPIFLIAALWIRRSLRKSLKRRDFELDRNVAKQLETQQVSQVLEKVENLDQKRIPTDIRLFLLPYVAYWNPSIKERIGELSKPHLEDLPRPSRIPRIGLRGRVITVAVGFGIFWGSGLVEGNIYARGQTTVVCMDTTCSALVVIAAVGFWMAIIGGISIIVWIARRFLETRGRANPPELVWMIIFGVGEVVTRFRGNYWTRSWVSLPLAP