Scaffold Ga0209180_10001349

Overview

Basic Information

• Taxon OID: 3300027846
• Scaffold ID: Ga0209180_10001349
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12178
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006299	Metagenome / Metatranscriptome	376	Y
F006466	Metagenome	372	Y
F010312	Metagenome	305	N
F013280	Metagenome / Metatranscriptome	272	Y
F014110	Metagenome / Metatranscriptome	265	Y
F075877	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209180_1000134910	F075877	AGGA	LGIGNGDGFDVLDSKEEERVLHRIENRGSFNTLDLAIRLHYSVNDSRRHRVHEDHYILRLVFQPGRVEVLVHHLKGVRRVEPDELIRLIIQELNVELTRDRYGQIELEAVDIT
Ga0209180_1000134912	F010312	N/A	MKCLPAYGRFRLEMASPKKELMMLRVFRLTLPAALLVSLTWMTLFTDTARQAVINSLGANANVIIFILGLFLVVGLYWVMGVYERKILYENHRRPAF
Ga0209180_1000134914	F014110	AGGA	VDLAKLRGKTGPAVDFLREHVMSAKGHVSAKGTQIQVEGLKHREVKLLLHKFLRHAGLNDHRVLSQSGILEIVPPHVTTHPRREEGTTPPAAATMPYLFPGTPTSVSTYKKRKKKS
Ga0209180_1000134915	F006299	GAG	LIVSTEVVSKETPEVVEFNQLKARSTAEALTELVKEFGIVYITALTRQGCSGCETQKPLFKTLAEKMSGENSGKILFRSLHVNYQDGDKQESWNSKRIFGHAAYPTYTIHVKSHVGPLEIYRSVYPPMEELEKQIKESFELADFYKTEAENASGLTPEKL
Ga0209180_100013494	F006466	GGA	LLVIIWSKIADDIYRLPGPDSAILLLQFMLVIFLMETSTTVLTFDSSIRQLSGKTDDLSSVARMRVTKWERVQLLSLGKLTLASFGLSLGLLILGSLVSVSVNQIAFSGILVLAAVVAIFILLTFRREPEEPRRSVD
Ga0209180_100013497	F013280	N/A	LKTVRLLIWAAVAYAVLLVLARGIFPSESTPPISLTGIPLIVIVFIIARDLARKSTTPTEKMTVVKPKGFQGNPVQFLSGQFRVAATASNSYFEKLVRARLKELLIAKIAIETGQETNVVRQLLSDSKRGPMLLQDESLYRMLYGPTPRAGLARMNMINDAIDLIGAWKS